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Using Vlife Qsar Software Free Download crack, warez. Download Free 3d Qsar Software Update Perkin. Elmer Informatics Chem. Draw and Chem. 3D QSAR in Drug Design: Volume 1. (Three-Dimensional Quantitative Structure Activity Relationships) (v. Below and we'll send you a link to download the free.
QSAR By Nehla p Department of Pharmaceutical Chemistry Grace college of pharmacy • QUANTITATIVE STRUCTURE ACTIVITY RELATIONSHIP It is said to be a mathematical relationship in the form of an equation between the biological activity and measurable physiochemical parameters. QSAR attempts to identify and quantify the physicochemical properties of a drug and to see whether any of these property has an effect on the drugs biological activity • • The parameters used in QSAR is a measure of the potential contribution of its group to a particular property of the parent drug. • Activity is expressed as log(1/C). C is the minimum concentration required to cause a defined biological response. Physicochemical property as log p.
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• PARAMETERS ‰Various parameters used in QSAR studies are 1.Lipophilic parameters: partition coefficient, π- substitution constant. 2.Electronic parameters: Hammet constant, dipole moment. 3.Steric parameters: Taft’s constant, molar refractivity, Verloop steric parameter. • LIPOPHILIC PARAMETERS Lipophilicity is partitioning of the compound between an aqueous and non-aqueous phase.
Partition coefficient: P=[drug] in octanol/[drug] in water High P High hydrophobicity • Linear relationship between Log p and Log 1/C •Activity of drugs is often related to P e.g. Binding of drugs to serum albumin (straight line - limited range of log P) Log (1/C) Log P....... 0.78 3.82 •Binding increases as log P increases •Binding is greater for hydrophobic drugs Log 1 C = k1 logP + k2 • Non –linear relationship between Log P and Log 1/C Example 2 General anaesthetic activity of ethers (parabolic curve - larger range of log P values) Log P o Log P Log (1/C) Optimum value of log P for anaesthetic activity = log Po Log 1 C = -k1 (logP) 2 + k2logP + k3 • π-substituent constant or hydrophobic substituent constants: • The π-substituent constant defined by Hansch and co-workers.
• Measure of how hydrophobic a substituent is,relative to H πx= log Px-log PH Benzene (LogP = 2.13) Chlorobenzene (Log P = 2.84) Benzamide (LogP = 0.64) Cl CONH2 pCl = 0.71 pCONH = -1.492 • •Positive values imply substituents are more hydrophobic than H •Negative values imply substituents are less hydrophobic than H Example: meta-Chlorobenzamide Cl CONH2 Log P(theory) = log P(benzene) + pCl + pCONH = 2.13 + 0.71 - 1.49 = 1.35 Log P (observed) = 1.51 2 •A QSAR equation may include both P and p. •P measures the importance of a molecule’s overall hydrophobicity (relevant to absorption, binding etc.) • p identifies specific regions of the molecule which might interact with hydrophobic regions in the binding site • ELECTRONIC PARAMETERS Hammett Substituent Constant (s) Eg. X= electron withdrawing group (e.g.
NO2) + X = electron withdrawing group X CO2CO2H X H Charge is stabilised by X Equilibrium shifts to right KX >KH s X = log KX KH = logKX - logKH Positive value • X= electron donating group (e.g. CH3) + X = electron withdrawing group X CO2CO2H X H Charge destabilised Equilibrium shifts to left KX. Toshiba E Studio 255 Scanner Driver Free Download.
Virtual screening, the search for bioactive compounds via computational methods, provides a wide range of opportunities to speed up drug development and reduce the associated risks and costs. While virtual screening is already a standard practice in pharmaceutical companies, its applications in preclinical academic research still remain under-exploited, in spite of an increasing availability of dedicated free databases and software tools. In this survey, an overview of recent developments in this field is presented, focusing on free software and data repositories for screening as alternatives to their commercial counterparts, and outlining how available resources can be interlinked into a comprehensive virtual screening pipeline using typical academic computing facilities. Finally, to facilitate the set-up of corresponding pipelines, a downloadable software system is provided, using platform virtualization to integrate pre-installed screening tools and scripts for reproducible application across different operating systems. Introduction In the pharmaceutical industry, computational techniques to screen for bioactive molecules have become an established complement to classical experimental high-throughput screening methods. Previous success stories have shown that using virtual screening approaches can help to reduce the required time and costs for drug development projects and mitigate the risk for late-stage failures (e.g.